List of SIF Client Publications
How has the SIF been a part of your research? In commemoration of our 20th anniversary, we are compiling a list of citations for our website where you have used the SIF for your isotope data. Please email sif@ucdavis.edu with your publications, including DOI if applicable.
A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z
Ares, Adrian; Harrington, Constance A. ; Terry, Thomas A. ; Kraft, Joseph M. 2008. Vegetation control effects on untreated wood, crude cellulose and holocellulose δ13C of early and latewood in 3- to 5-year-old rings of Douglas-fir. Trees 22:603-609.
Benomar L, Lamhamedi MS, Rainville A, Beaulieu J, Bousquet J and Margolis HA (2016) Genetic Adaptation vs. Ecophysiological Plasticity of Photosynthetic-Related Traits in Young Picea glauca Trees along a Regional Climatic Gradient. Front. Plant Sci. 7:48. [doi: 10.3389/fpls.2016.00048]
BERTRAND, S., ARANEDA, A., VARGAS, P., JANA, P., FAGEL, N., URRUTIA, R. (2012) — Using N/C ratios to correct bulk radiocarbon ages from lake sediments: Insights from Chilean Patagonia. Quaternary Geochronology, 12, 23-29. [doi: 10.1016/j.quageo.2012.06.003]
Bertrand, S., Hughen, K., Lamy, F., Stuut, J.-B., Torrejon, F., Lange, C. (2012) — Precipitation as the main driver of Neoglacial fluctuations of Gualas glacier, Northern Patagonian Icefield. Climate of the Past, 8, 519-534. [doi: 10.5194/cp-8-519-2012]
BERTRAND, S., HUGHEN, K., SEPÚLVEDA, J., PANTOJA, S. (2012) — Geochemistry of surface sediments from the fjords of Northern Chilean Patagonia (44-47°S): Spatial variability and implications for paleoclimate reconstructions. Geochimica et Cosmochimica Acta, 76 (1), 125-146. [doi: 10.1016/j.gca.2011.10.028]
BERTRAND, S., HUGHEN, K., SEPÚLVEDA, J., PANTOJA, S. (2014) — Late Holocene covariability of the southern westerlies and sea surface temperature in northern Chilean Patagonia. Quaternary Science Reviews, 105, 195-208. [doi: 10.1016/j.quascirev.2014.09.021]
BERTRAND, S., LANGE, C., PANTOJA, S., HUGHEN, K., VAN TORNHOUT, E., WELLNER, J. S. (2017) — Postglacial fluctuations of Cordillera Darwin glaciers (southernmost Patagonia) reconstructed from Almirantazgo fjord sediments. Quaternary Science Reviews 177, 265-275. [doi: 10.1016/j.quascirev.2017.10.029]
BERTRAND, S., STERKEN, M., VARGAS-RAMIREZ, L., DE BATIST, M., VYVERMAN, W., LEPOINT, G., FAGEL, N. (2010) P—P P Bulk organic geochemistry of sediments from Puyehue Lake and its watershed (Chile, 40°S): Implications for paleoenvironmental reconstructions. Palaeogeography, Palaeoclimatology, Palaeoecology, 294 (1-2), 56-71. [doi: 10.1016/j.palaeo.2009.03.012]
Biancani, P. J., R. H. Carmichael, J. H. Daskin, W. Burkhardt III, K. R. Calci (2012) Seasonal and spatial effects of wastewater effluent on growth, survival, and accumulation of microbial contaminants by oysters in Mobile Bay, Alabama. Est Coasts. 35:121-131. [doi: 10.1007/s12237-011-9421-7]
Blanes, MC; Emmett, BA; Viñegla, B; Carreira JA. 2012. Alleviation of P limitation makes tree roots competitive for N against microbes in a N-saturated conifer forest: A test through P fertilization and 15N labeling. Soil Biology & Biochemistry 48: 51-59. [doi: 10.1016/j.soilbio.2012.01.012]
Carmichael, R. H., W. Walton, H. Clark (2012) Bivalve enhanced N removal from coastal estuaries. Can. J. Fish. Aquat. Sci. 69:1131-1149. [doi: 10.1139/f2012-057]
Carmichael, R.H., A. Shriver, and I. Valiela (2012) Bivalve response to estuarine eutrophication: The balance between enhanced food supply and habitat alternations. J. Shellfish Res. 31: 1-11. [doi: 10.2983/035.031.0101]
Carmichael, R. H., E. Gaines, Z. Sheller, A. Tong, A. Clapp, I. Valiela (2009) Diet composition of juvenile horseshoe crabs: Implications for growth and survival of natural and cultured stocks, p. 521-534. In J. Tanacredi, M. Botton, D. Smith [eds.], Biology and Conservation of Horseshoe Crabs. Springer, New York.
Carmichael, R. H. and I. Valiela (2005) Coupling of near-bottom seston and surface sediment composition: Changes with nutrient enrichment and implications for estuarine food supply and biogeochemical processing. Limnol. Oceanogr. 50:97-105. [doi: 10.4319/lo.2005.50.1.0097]
Carmichael, R. H., B. Annett, I. Valiela (2004) Nitrogen loading to Pleasant Bay, Cape Cod: Application of models and stable isotopes to detect incipient nutrient enrichment of estuaries. Mar. Pollut. Bull. 48:137-143. [doi: 10.1016/S0025-326X(03)00372-2]
Carmichael, R. H., D. Rutecki, B. Annett, E. Gaines, I. Valiela (2004) Position of horseshoe crabs in estuarine food webs: N and C stable isotopic study of foraging ranges and diet composition. J. Exp. Mar. Biol. Ecol. 299:231-253. [doi: 10.1016/j.jembe.2003.09.006]
Christman MA, Richards JH, McKay JK, Stahl EA, Juenger TE, Donovan LA. 2008. Genetic variation in Arabidopsis thaliana for nighttime leaf conductance. Plant, Cell and Environment 31: 1170-1178. [doi: 10.1111/j.1365-3040.2008.01833.x]
Dalrymple, J. D. and R. H. Carmichael (2015) Effects of age class on N removal capacity of oysters and implications for bioremediation. Mar. Ecol. Progr. Ser. 528:205-220. [doi: 10.3354/meps11252]
D'Ambra, I., W. M. Graham, R. H. Carmichael, F. J. Hernandez, Jr. (2015) Fish rely on scyphozoan hosts as a primary food source: evidence from stable isotope analysis. Mar. Biol. 162:247-252. [doi: 10.1007/s00227-014-2569-5]
Darrow, E. S., R. H. Carmichael, C. F. T. Andrus, H. E. Jackson (2017) From middens to modern estuaries, oyster shells sequester source-specific nitrogen. Geochim Cosmochim Ac. 202:39-56. [doi: 10.1016/j.gca.2016.12.023]
Darrow, E. S., R. H. Carmichael, K. R. Calci, W. Burkhardt III (2016) Land-use related changes to sedimentary organic matter in tidal creeks of the northern Gulf of Mexico. Limnol. Oceanogr. 62(2):686-705. [doi: 10.1002/lno.10453]
D'Elia, A. H., Liles, G. C., Viers, J. H., Smart, D. R. (2017). Deep carbon storage potential of buried floodplain soils. Scientific Reports 7. [doi:10.1038/s41598-017-06494-4]
Des Marais DL, McKay JK, Richards JH, Sen S, Wayne T, Juenger TE. 2012. Physiological genomics of response to soil drying in diverse Arabidopsis thaliana accessions. Plant Cell 24:893-914. [doi: 10.1105/tpc.112.096180]
Dion, P. P., J. Bussieres, et L. Lapointe. 2017. Late Canopy Closure Delays Senescence and Promotes Growth of the Spring Ephemeral Wild Leek (Allium Tricoccum). Botany 95, no 5 (May 2017): 457 67. [doi: 10.1139/cjb-2016-0317]
Drenovsky RE, Martin AM, Falasco MR, Richards JH. 2011. Comparative ecology of Sarcobatus baileyi and Sarcobatus vermiculatus in eastern California. Western North American Naturalist 71: 234-239. [doi: 10.3398/064.071.0210]
Drymon, J. M., S. P. Powers, R. H. Carmichael (2012) Trophic plasticity in the Atlantic sharpnose shark (Rhizoprionodon terraenovae) from the north central Gulf of Mexico. Environ. Biol. Fish. 95:21-35. [doi: 10.1007/s10641-011-9922-z]
Easlon HM, Nemali KS, Richards JH, Hanson DT, Juenger TE, McKay JK. 2013. The physiological basis for genetic variation in water use efficiency and carbon isotope composition in Arabidopsis thaliana. Photosynthesis Research 119:119-129. [doi: 10.1007/s11120-013-9891-5]
Easlon HM, Richards JH. 2009. Drought response in self-compatible species of tomato (Solanaceae). American Journal of Botany 96: 605-611.
FIERS, G., BERTRAND, S., GRANON, E., VAN DAELE, M., VANDOORNE, W., REID, B. & DE BATIST, M. (in preparation). Hydroclimate variability of northern Patagonia during the last 20 kyr inferred from the bulk organic geochemistry of Lago Castor sediments (Chile, 45°S). Palaeogeography, Palaeoclimatology, Palaeoecology.
Fila, L., R. H. Carmichael, A. Shriver, I. Valiela (2001) Stable N isotopic signatures in bay scallop tissue, feces, and pseudofeces in Cape Cod estuaries subject to different N loads. Biol. Bull. 201:294-296.
Flores, C. 2017. Importance of small-scale paleo-oceanographic conditions to interpret changes in size of California mussel (Mytilus californianus). Late Holocene, Santa Cruz island, California. Quaternary International, Volume 427, Part A, Pages 137-150 [doi:10.1016/j.quaint.2016.01.036]
Gaines, E., R. H. Carmichael*, S. P. Grady, I. Valiela (2002) Stable isotopic evidence for changing nutritional sources of juvenile horseshoe crabs. Biol. Bull. 203:228-230. (U)
GHAZOUI, Z., BERTRAND, S., VANNESTE, K., YOKOYAMA, Y., NOMADE, J., GAJUREL, A.P., VAN DER BEEK, P.A. — Seismic gap in western Nepal disproved by lake sediment records. Nature communications (in revision).
Gilmour ME, CR Lattin, LM Romero, MF Haussmann, RA Mauck, DC Dearborn. 2015. Finding the best predictor of reproductive performance of Leach’s Storm-petrels. Auk: Ornithological Advances 132: 191–205. [doi: 10.1642/AUK-14-21.1]
Griffin, J.M., Montañez, I.P., Matthews, J.A., Bates, S., Lyons, T.W., A refined protocol for δ18OPO4 analysis of conodont bioapatite, In Chemical Geology, Volume 417, 2015, Pages 11-20, ISSN 0009-2541 [doi: 10.1016/j.chemgeo.2015.08.025]. Keywords: Bioapatite; Oxygen isotope; Conodont; Silver phosphate; Permo-Carboniferous
Guerra FP, Richards JH, Fiehn O, Famula R, Stanton BJ, Shuren R, Sykes R, Davis MF, Neale DB. 2016. Analysis of the genetic variation in growth, ecophysiology, and chemical and metabolomic composition of wood of Populus trichocarpa provenances. Tree Genetics and Genomes 12:6 [doi: 10.1007/s11295-015-0965-8]
Hieb, E. E., J. Baggett, A. Aven, R. H. Carmichael (2015) Effects of sediment type and tank shape on horseshoe crab (Limulus polyphemus) growth and survival in culture. p. 289-302. In R. H. Carmichael, M. Botton, P.K.S. Shin, S.G. Cheung [eds.], Changing Global Perspectives on Horseshoe Crab Biology, Conservation, and Management, Springer, New York.
James JJ, Aanderud ZT, Richards JH. 2006. Seasonal timing of N pulses influences N capture in a saltbush scrub community. Journal of Arid Environments 67: 688-700.
James JJ, Richards JH. 2007. Influence of temporal heterogeneity in nitrogen supply on competitive interactions in a desert shrub community. Oecologia 152: 721-727.
James JJ, Richards JH. 2006. Plant nitrogen capture in pulse-driven systems: interactions between root responses and soil processes. Journal of Ecology 94: 765-777.
James, J.J. and J.H. Richards. 2005. Plant N capture from pulses: effects of pulse size, growth rate, and other soil resources. Oecologia 145: 113-122.
Juenger, T.E., McKay, J.K., Hausmann, N., Keurentjes, .J, Sen S., Stowe, K.A., Dawson, T.E., Simms, E.L., Richards, J.H. 2005. Identification and characterization of QTL underlying whole-plant physiology in Arabidopsis thaliana: δ13C, stomatal conductance, and transpiration efficiency. Plant, Cell and Environment 28: 697–708
Juenger TE, Sen S, Bray E, Stahl E, Wayne T, McKay J, Richards JH. 2010. Exploring genetic and expression differences between physiologically extreme ecotypes: comparative genomic hybridization and gene expression studies of Kas-1 and Tsu-1 accessions of Arabidopsis thaliana. Plant, Cell and Environment 33: 1268-1284. [doi: 10.1111/j.1365-3040.2010.02146.x]
Kenney AM, McKay JK, Richards JH, Juenger TE. 2014. Direct and indirect selection on flowering time, water-use efficiency (WUE, δ13C), and WUE plasticity to drought in Arabidopsis thaliana. Ecology and Evolution 4: 4505-4521. [doi: 10.1002/ece3.1270]
Kogovšek T, Tinta T, Klun K, Malej A. Jellyfish biochemical composition: importance of standardised sample processing. Mar Ecol Prog Ser 2014; 510: 275-288.
Kovacs, C., J. Daskin, H. Patterson, R. H. Carmichael (2010) Crassostrea virginica shells record local variation in wastewater inputs to a coastal estuary. Aquatic Biol. 9:77-84. [doi: 10.3354/ab00228]
Krause, J., E. Darrow, R. Pickering, R. H. Carmichael, A. Larson, J. Basaldua. Reactive silica fractions in coastal lagoon sediments from the northern Gulf of Mexico (2017) Cont. Shelf Res. 151(2017):8-14. [doi: 10.1016/j.csr.2017.09.014]
Lovell JT, Juenger TE, Michaels SD, Lasky JR, Platt A, Richards JH, Yu X, Sen S, McKay JK. 2013. Pleiotropy of FRIGIDA enhances the potential for multivariate adaptation. Proceedings of the Royal Society of London, Series B, Biological Sciences 280: 20131043. [doi: 10.1098/rspb.2013.1043]
Matzner, S.L., Rice, K.J., and Richards, J.H. 2001. Factors affecting the relationship between carbon isotope discrimination and transpiration efficiency in blue oak (Quercus douglasii). Australian Journal of Plant Physiology 28: 49-56.
McKay, J.K., Bishop, J.G., Lin, J-Z., Richards, J.H., Sala, A., and Mitchell-Olds, T. 2001. Local adaptation across a climatic gradient despite small effective population size in the rare sapphire rockcress. Proceedings of the Royal Society of London. Series B, Biological Sciences 268: 1715-1721.
McKay, J.K., Richards, J.H., Nemali, K.S., Sen, S., Mitchell-Olds, T., Boles, S., Stahl, E.A., Wayne, T., Juenger, T.E. 2008. Genetics of drought adaptation in Arabidopsis thaliana II. QTL analysis of a new mapping population, Kas-1 x Tsu-1. Evolution 62: 3014 – 3026.
McKay, J.K., Richards, J.H., and Mitchell-Olds, T. 2003. Genetics of drought adaptation in Arabidopsis thaliana: I. Pleiotropy contributes to genetic correlations among ecological traits. Molecular Ecology 12: 1137-1151.
McKay, J.K., Bishop, J.G., Lin, J-Z., Richards, J.H., Sala, A., and Mitchell-Olds, T. 2001. Local adaptation across a climatic gradient despite small effective population size in the rare sapphire rockcress. Proceedings of the Royal Society of London. Series B, Biological Sciences 268: 1715-1721.
O'Connell, C. W., S. P. Grady, A. S. Leschen, R. H. Carmichael, I. Valiela (2003) Stable isotopic assessment of site loyalty and relationships between size and trophic position of the Atlantic horseshoe crab, Limulus polyphemus, within Cape Cod estuaries. Biol. Bull. 205:254-255.
Patterson H. K. and R. H. Carmichael (2016) The effect of lipid extraction on carbon and nitrogen stable isotope ratios in oyster tissues: Implications for glycogen‐rich species. Rapid Commun. Mass Sp. 30(24): 2594-2600. [doi: 10.1002/rcm.7759]
Pereira, E. I.P., H. Chung, K. Scow, and J. Six. 2013. Microbial Communities and Soil Structure are Affected by Reduced Precipitation, but Not by Elevated Carbon Dioxide. Soil Sci. Soc. Am. J. 77:482-488. [doi: 10.2136/sssaj2012.0218]
Pereira, E.I.P., Chung, H., Scow, K., Sadowsky, M.J., van Kessel, C., Six, J. Soil nitrogen transformations under elevated atmospheric CO2 and O3 during the soybean growing season, In Environmental Pollution, Volume 159, Issue 2, 2011, Pages 401-407, ISSN 0269-7491. [doi: 10.1016/j.envpol.2010.10.033] Keywords: Nitrification; Denitrification; Real-time quantitative PCR; FACE; Soil N cycling
Pereira, E.I.P., Suddick, E.C., Mansour, I., Mukome, F., Parikh, S., Scow, K. & Six, J. (2015). Biochar alters nitrogen transformations but has minimal effects on nitrous oxide emissions in an organically managed lettuce mesocosm. Biology and Fertility of Soils. 51. 1-10. [doi: 10.1007/s00374-015-1004-5].
PIRET, L., BERTRAND., S., KISSEL, C., DE POL-HOLZ, R., TAMAYO HERNANDO, A., VAN DAELE, M. — First evidence of a mid-Holocene earthquake-triggered megaturbidite south of the Chile Triple Junction. Sedimentary Geology (submitted).
REBOLLEDO, L., SEPÚLVEDA, J., LANGE, C., PANTOJA, S., BERTRAND, S., HUGHEN, K., FIGUEROA, D. (2008) — Late Holocene marine productivity changes in Northern Patagonia-Chile inferred from a multi-proxy analysis of Jacaf channel sediments. Estuarine, Coastal and Shelf Sciences, 80 (3), 314-322. [doi: 10.1016/j.ecss.2008.08.016]
Resco, V; Ferrio, JP.; Carreira, JA.; L. Calvo, P. Casals, A. Ferrero-Serrano, E. Marcos, J.M. Moreno, D.A. Ramírez, M.T. Sebastià, F. Valladares, D.G. Williams. 2011. The stable isotope ecology of terrestrial plant succession. Plant Ecology & Diversity 4(2-3): 117-130. [DOI: 10.1080/17550874.2011.576708]
SEPÚLVEDA, J., PANTOJA, S., HUGHEN, K., BERTRAND, S., FIGUEROA, D., LÉON, T., DRENZEK, N., LANGE, C. (2009) — Late Holocene sea-surface temperature and precipitation variability in Northern Patagonia, Chile (Jacaf Fjord, 44°S). Quaternary Research, 72, 400-409. [doi: 10.1016/j.yqres.2009.06.010]
Snyder, K.A., Donovan, L.A., James, J.J., Tiller, R.L., Richards, J.H. 2004. Extensive summer water pulses do not necessarily lead to canopy growth of Great Basin and northern Mojave Desert shrubs. Oecologia 141: 325-334.
Snyder, K.A., James JJ, Richards JH, Donovan LA. 2008. Does hydraulic lift or nighttime transpiration facilitate nitrogen acquisition? Plant and Soil 306: 159–166.
Wang, C., Liu, D., Luo, W., Fang, Y., Wang, X., Lü, X., Jiang, Y., Han, X., Bai, E., 2016. Variations in leaf carbon isotope composition along an arid and semi-arid grassland transect in northern China. Journal of Plant Ecology 9, 576-585. [doi: 10.1093/jpe/rtw006]
Wang, C., Wang, X., Liu, D., Wu, H., Lü, X., Fang, Y., Cheng, W., Luo, W., Jiang, P., Shi, J., 2014. Aridity threshold in controlling ecosystem nitrogen cycling in arid and semi-arid grasslands. Nature Communications 5. 4799 [DOI: 10.1038/ncomms5799]
Wang, C., Wei, H., Liu, D., Luo, W., Hou, J., Cheng, W., Han, X., Bai, E., 2017. Depth profiles of soil carbon isotopes along a semi-arid grassland transect in northern China. Plant and Soil 417, 43-52. [DOI: 10.1007/s11104-017-3233-x]
Weiss, E., R. H. Carmichael, I. Valiela (2002) The effect of nitrogen loading on the growth rates of quahogs and softshell clams through changes in food supply. Aquaculture 211:275-289. [doi: 10.1016/S0044-8486(02)00018-2]